Welcome to the documentation of EPCOT!

This is a documentation for usage of EPCOT pre-trained models, including installation instructions and tutorials on how to effectively utilize the models.

Note

The weights for the EPCOT models can be downloaded from HuggingFace.

Contents

Installation

• Installation
  • EPCOT Installation
  • EPCOTv2 Installation

Tutorials

• Tutorials for using EPCOT
  • EPCOT: Predicting Human Genomic Modalities from ATAC-seq
    • Introduction
    • Prerequisites
    • Quickstart
    • Inputs & Outputs
    • Predicted Modalities
    • Notes
    • Reference
  • EPCOTv2: Predicting Human and Mouse Genomic Modalities from ATAC-seq
    • Introduction
    • Human Data Prediction
    • Mouse Data Prediction